The Best Shopify Accounting Software: Our Top 7 Picks Bench Accounting

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bookkeeping for shopify

Here is the complete guide for handling Shopify store management hassle-free. Developing a successful product development strategy for your Shopify store requires flexibility, gathering information, and setting realistic goals. With Shopify store features, it is easier to diversify by adding new products, strong customer support, and partnering with other organizations.

LTV – Lifetime Value of a Customer

  • Organizing your expenses into specific budget categories helps you prepare for a smooth tax filing season and make more informed business decisions.
  • With Shopify Managed Markets, duties and tax-inclusive pricing for international orders are simplified.
  • This includes our profit margin calculator, eCommerce annual forecast template, salary cap calculator, financial roadmapping template, and more.
  • With automated bookkeeping tools like doola, this process becomes seamless and less time-consuming.
  • Streamline your financial management processes, save time, and make informed decisions with real-time data integration using Link My Books.

Bookkeep captures all payment methods—both online and offline—allowing you to relax, confident that your accounting stays accurate even without Wi-Fi cooperating. Choosing the right e-commerce accounting tool can make or break the financial health of your business. Whether you use Shopify, eBay, or any other E-commerce platform, this platform automatically syncs all your data on other accounting software like Xero and QuickBooks Online. FreshBooks is the go-to solution for freelancers and small businesses with a maximum of 50 employees. An easy-to-use accounting tool that is feasible and ready to be used on the go.

Exploring these options through their free trials is an intelligent way to see which fits your Shopify stores best. Each software has unique features, so evaluating them will help you find the perfect match for your business needs. Reliable support and customer support are crucial when using accounting software. You might encounter technical issues or have questions about specific features, so having dependable assistance is vital. Choosing software with solid support options, such as live chat, email, or phone support, ensures you can get help when needed.

Shopify and VAT, GST, and Sales Taxes

This comprehensive guide will walk you through the best options available in 2025, helping you choose the perfect solution for your Shopify business. At Bench, though, you don’t have to worry about figuring out accounting software or learning what, exactly, a chart of accounts is. We take monthly bookkeeping and accounting off your hands completely, saving you a ton of time and giving you the peace of mind that comes with knowing that your books are accurate. Don’t worry about data entry or expense categorization—we’re here to help.

Features of Xero

Multi-currency support is available starting with the bookkeeping for shopify Standard plan, while all plans include essential features like invoicing, bill management, and expense claims. Sage is one of the biggest names in business management software, with over two million businesses using its various tools. Its small business accounting solution, Sage 50 Accounting, is a desktop platform with cloud connectivity. Zoho Books simplifies e-commerce accounting by completely automating tasks such as tracking income and expenses, managing accounts payable/receivable, generating financial reports, and more. Dedicated e-commerce accounting software makes tracking all your Shopify transactions much easier. Integrating your Shopify store with cloud accounting platforms provides automation, saving hours of manual work.

Xero is an online accounting software that helps businesses manage their finances. The software is designed to simplify accounting tasks and improve visibility into your business’s financial health. ZarMoney is an accounting software solution designed to simplify financial processes for businesses.

And if you deal with multiple currencies, the Comprehensive plan has you covered. Sage 50 Accounting doesn’t offer a free plan, but it does have a 30-day free trial. Paid plans range from $58.92 – $160 per month, with discounts available if you pay annually rather than monthly. Refunds and chargebacks are inevitable in running an e-commerce business, and you must account for them accurately. It is humanly impossible to keep track of different inventory items if you are a medium-sized Shopify store with multiple suppliers and a good number of daily orders. That’s where an excellent Shopify bookkeeping software comes to the rescue.

If your Shopify business collects sales tax, Quickbooks can accurately track this for you too. Zoho Books is a good option for those needing more customization, while OneUp focuses on automation. Sage Business Cloud Accounting provides thorough financial data reporting.

bookkeeping for shopify

Connector apps help streamline your business, save you time, and increase data accuracy through automation, as opposed to manual data entry, which can introduce errors. Connectors can speed up the flow of information from one software platform to another, allowing you access to the information you need quickly. Staying compliant with tax regulations is critical for avoiding fines and legal issues. This includes correctly categorising products, understanding nexus laws, and filing taxes in every jurisdiction where you have sales tax obligations. Regular reviews and updates to your tax settings on Shopify help maintain compliance. Dedicate specific time each week or month to manage your accounting tasks.

Additionally, spreadsheets lack the advanced features of accounting software, such as automated tax calculations, real-time financial insights, and integration with payment gateways and Shopify. QuickBooks is generally considered the industry standard in accounting software for small businesses. It is relatively easy to use and provides essential bookkeeping and accounting functionality like expense tracking, financial statement generation, and invoicing.

Top 5 Best Accounting for Shopify Store

Zoho Books swaggers in with its freebie for those pulling in less than $50K a year—nice for penny-pinching newbies. You’ve got a snazzy mobile app, payment gateway tweaks, and even inventory checks—next to your typical accounting stuff. Shopify fans will need some extra coin, though— add-on flows cost $25 or $41 a month. Now, choosing between these two methods isn’t just a coin toss—it’s about the size of your hustle and what you wanna achieve down the road. While cash accounting keeps things simple and gives you a straight-shooting view of cash flow, accrual accounting digs deeper and shows a fuller picture of how things are shakin’ out.

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